Convert trackll to a (bivariate) displacement format for Hidden Markov Model fitting.
hmmTrackll(trackll, t.interval=0.01)
| trackll | list of trajectorise created by crreateTrackll(). |
|---|---|
| t.interval | time interval. |
Hidden Markov Model fitted trackll
dx, displacement on x.
dy, displacement on y.
time, lenght of time a particle has being traveling.
trackStepIndex, steps index within a track.
folder=system.file('extdata','SWR1',package='sojourner') trackll=createTrackll(folder=folder, input=3)#> #> Reading ParticleTracker file: SWR1_WT_140mW_image6.csv ... #> #> mage6 read and processed. #> #> Process complete.hTrackll=hmmTrackll(trackll)#> calculating displacement... #> #> 207 tracks satisfy dt = 1 #> #> ...