plotIndividualTracks

Plot individual tracks one by one, with grid layout. Tracks are sorted by their lengths.

plotIndividualTracks(trackll=trackll,grid.size=c(1000,1000),
resolution=0.107,t.interval=0.5)

Arguments

trackll	trajectory list generated by createTrackll() and processing.
grid.size	The size of each plot grid in nanometers. Default 1000 nm for x and y axis, respectively.
resolution	ratio of pixel to uM.
t.interval	Time interval for image aquisition. Default 0.5 sec (500ms).

Value

• PDF: One PDF file with 120 tracks on each page.

Details

Plot individual track/trajectory one by one, and the tracks will be layout in 15X8 grids.

Examples

# Generate trackll, and process, 
# e.g. mask region of interest, tracks from multiple files should not be 
# merged.
folder=system.file('extdata','HSF',package='sojourner')
trackll=createTrackll(folder=folder, input=3)
#> 
#> Reading ParticleTracker file:  HSF-Halo_1.csv ...
#> 
#>  alo_1 read and processed.
#> 
#> Reading ParticleTracker file:  HSF-Halo_2.csv ...
#> 
#>  alo_2 read and processed.
#> 
#> Process complete.
trackll=filterTrack(trackll,filter=c(7,Inf))
#> applying filter, min 7   max Inf 
trackll=maskTracks(folder,trackll)
#> Reading mask file     HSF-Halo_1_MASK.tif 
#> Reading mask file     HSF-Halo_2_MASK.tif 
#> 
#> All files masked.
trackll=mergeTracks(folder, trackll)
#> 
#> Merging of folder HSF complete.

# Plot individual tracks,
plotIndividualTracks(trackll,grid.size=c(1000,1000),resolution=0.107,
                     t.interval=0.5)
#> The plot has been saved as a PDF in the working directory.